SMTL ID : 7nnj.1 (1 other biounit)

Crystal Structure of NUDT4 (Diphosphoinositol polyphosphate phosphohydrolase 2) in complex with 4-O-Bn-1-PCP-InsP4 (AMR2105)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: V.58, G.69, K.70, L.71 Ligands: FMT.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.69, A:L.71 EDO.2: 6 residues within 4Å: Chain A: R.14, N.80, H.85, K.127, H.130 Ligands: FMT.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.80 Water bridges: A:N.80, A:T.87, A:K.127, A:H.130

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 8 residues within 4Å: Chain A: R.14, A.16, V.42, G.44, T.87, H.130, Y.133 Ligands: EDO.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.14, A:R.14, A:V.42 FMT.4: 4 residues within 4Å: Chain A: K.12, R.14, G.45, G.46 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.12, A:R.14 Water bridges: A:G.46, A:G.46 FMT.5: 4 residues within 4Å: Chain A: V.58, K.68, G.69 Ligands: EDO.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.69, A:G.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Riley, A.M. et al., Crystal Structure of NUDT4 (Diphosphoinositol polyphosphate phosphohydrolase 2) in complex with 4-O-Bn-1-PCP-InsP4 (AMR2105). To Be Published

Release Date

2022-03-23

Peptides

Diphosphoinositol polyphosphate phosphohydrolase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Diphosphoinositol polyphosphate phosphohydrolase 2

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