SMTL ID : 7npe.1 (1 other biounit)

Vibrio cholerae ParA2-ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: K.119, G.120, G.121, T.122, G.123, K.124, S.125, M.126, M.320, I.348, P.349, R.350, S.351, F.354, A.358 Ligands: MG.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.121, A:T.122, A:K.124, A:S.125, A:S.125, A:M.126, A:P.349, A:S.351 ADP.4: 15 residues within 4Å: Chain B: G.120, G.121, T.122, G.123, K.124, S.125, M.126, M.320, P.349, R.350, S.351, F.354, E.355, A.358 Ligands: MG.5 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.119, B:G.121, B:T.122, B:G.123, B:K.124, B:S.125, B:S.125, B:M.126, B:P.349, B:S.351

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: S.125 Ligands: ADP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.125 MG.5: 3 residues within 4Å: Chain B: S.125, D.151 Ligands: ADP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.125

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: V.329, L.332, T.333, N.336 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.336 GOL.6: 3 residues within 4Å: Chain A: L.311 Chain B: T.8, N.11 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.11, A:L.311

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parker, A.V. et al., The cryo-EM structure of the bacterial type I segregation filament reveals ParA s conformational plasticity upon DNA binding. To Be Published

Release Date

2021-07-21

Peptides

AAA family ATPase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AAA family ATPase

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