SMTL ID : 7npk.1

ALPHA-1 ANTITRYPSIN C232S COMPLEXED WITH CMPD3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: A.41, F.45, H.279, I.282, L.286, I.385, K.390, S.391, P.392 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.390 Water bridges: A:H.279 GOL.2: 6 residues within 4Å: Chain A: T.58, N.59, T.304, G.305, T.306, Y.307 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.306, A:T.306, A:Y.307

1 x UL2: N-((1S,2R)-1-hydroxy-1-(o-tolyl)pentan-2-yl)-2-oxo-2,3-dihydrobenzo[d]oxazole-5-carboxamide(Non-covalent)

UL2.3: 13 residues within 4Å: Chain A: W.204, M.231, Y.254, F.262, L.298, P.299, K.300, L.301, L.348, I.350, F.376, F.380, F.382 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:M.231, A:Y.254, A:F.262, A:F.262, A:F.262, A:K.300, A:L.348, A:L.348, A:I.350, A:F.376, A:F.380 Hydrogen bonds: A:Y.254, A:P.299, A:P.299, A:L.301 pi-Stacking: A:W.204, A:W.204, A:F.262, A:F.382

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liddle, J. et al., The development of highly potent and selective small molecule correctors of Z alpha 1 -antitrypsin misfolding. Bioorg.Med.Chem.Lett. (2021)

Release Date

2021-04-07

Peptides

Alpha-1-antitrypsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-1-antitrypsin