SMTL ID : 7npm.1

X-ray structure of the adduct formed upon reaction of oxaliplatin with human angiogenin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

3 x PT: PLATINUM (II) ION(Non-covalent)

PT.1: 2 residues within 4Å: Chain A: H.7, Q.11 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.7 PT.2: 3 residues within 4Å: Chain A: H.83, R.94 Ligands: PT.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.83 PT.3: 2 residues within 4Å: Chain A: H.83 Ligands: PT.2 No protein-ligand interaction detected (PLIP)

1 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.4: 3 residues within 4Å: Chain A: G.98, F.99, R.100 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:F.99, A:F.99 Water bridges: A:R.100, A:R.100, A:R.100, A:R.121 Salt bridges: A:R.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marzo, T. et al., Oxaliplatin inhibits angiogenin proliferative and cell migration effects in prostate cancer cells. J.Inorg.Biochem. (2022)

Release Date

2022-03-23

Peptides

Angiogenin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Angiogenin

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