SMTL ID : 7nq0.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH oxabicyclo(hexan-6-yl)-N2-methyl-6-((S)-1-phenylethyl)pyridine-2,4-dicarboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.104 Water bridges: A:D.104 EDO.2: 3 residues within 4Å: Chain A: K.62, D.67, E.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.62, A:K.62, A:E.73 EDO.3: 5 residues within 4Å: Chain A: Y.86, K.87, Y.88, N.89, P.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.87

1 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.4: 7 residues within 4Å: Chain A: S.7, L.10, K.11, N.14, M.63, E.64, R.66 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.66 Hydrogen bonds: A:K.11

1 x ULN: ~{N}2-methyl-~{N}4-[(1~{R},5~{S})-3-oxabicyclo[3.1.0]hexan-6-yl]-6-[(1~{S})-1-phenylethyl]pyridine-2,4-dicarboxamide(Non-covalent)

ULN.5: 10 residues within 4Å: Chain A: W.30, P.31, V.36, L.43, Y.88, N.89, P.90, H.93, V.95, M.98 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.30, A:Y.88, A:V.95 Hydrogen bonds: A:N.89, A:N.89 Water bridges: A:P.31 pi-Stacking: A:H.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harrison, L.A. et al., Identification of a Series of N -Methylpyridine-2-carboxamides as Potent and Selective Inhibitors of the Second Bromodomain (BD2) of the Bromo and Extra Terminal Domain (BET) Proteins. J.Med.Chem. (2021)

Release Date

2021-07-21

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 2

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