SMTL ID : 7nqj.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N-ethyl-2-(1-methyl-1H-1,2,3-triazol-4-yl)-6-(1-phenylethyl)isonicotinamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x UME: N-ethyl-2-(1-methyl-1H-1,2,3-triazol-4-yl)-6-(1-phenylethyl)isonicotinamide(Non-covalent)

UME.1: 13 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.41, L.43, C.85, Y.88, N.89, P.90, H.93, V.95, M.98 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.30, A:W.30, A:L.41, A:L.43, A:Y.88, A:V.95 Hydrogen bonds: A:N.89, A:N.89 pi-Stacking: A:H.93

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.104 EDO.3: 2 residues within 4Å: Chain A: K.62, D.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.62, A:K.62, A:E.73 EDO.4: 4 residues within 4Å: Chain A: Y.86, K.87, Y.88, N.89 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.88

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 4 residues within 4Å: Chain A: S.7, L.10, K.11, N.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.11 Water bridges: A:K.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aylott, H.E. et al., Template-Hopping Approach Leads to Potent, Selective, and Highly Soluble Bromo and Extraterminal Domain (BET) Second Bromodomain (BD2) Inhibitors. J.Med.Chem. (2021)

Release Date

2021-04-07

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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