SMTL ID : 7nqu.1 (1 other biounit)

Plasmodium falciparum Hsp70-x chaperone nucleotide binding domain in complex with Z396380540

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

monomer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: D.35, K.130, E.133, V.134, T.137 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.133 Water bridges: A:D.35 GOL.3: 7 residues within 4Å: Chain A: K.74, R.75, R.79, P.151, Y.153, F.154, T.230 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.16, A:R.75, A:R.79, A:Y.153 Water bridges: A:R.75 GOL.4: 4 residues within 4Å: Chain A: E.273, K.274, R.277 Ligands: GOL.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.273 GOL.5: 6 residues within 4Å: Chain A: Y.18, N.38, R.39, T.40, R.277 Ligands: GOL.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.39, A:T.40, A:T.40, A:R.277, A:R.277 Water bridges: A:D.371 GOL.6: 6 residues within 4Å: Chain A: R.347, Q.352, K.366, A.367, N.369, P.370 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.352, A:N.369 Water bridges: A:Q.352, A:K.366 GOL.8: 3 residues within 4Å: Chain A: A.167, G.170, L.171 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.167, A:G.170 Water bridges: A:L.171, A:N.172 GOL.9: 2 residues within 4Å: Chain A: Y.187, K.192 No protein-ligand interaction detected (PLIP)

1 x AN2: AMP PHOSPHORAMIDATE(Non-covalent)

AN2.2: 19 residues within 4Å: Chain A: G.15, T.16, T.17, Y.18, G.205, G.206, G.234, E.235, E.273, K.276, R.277, S.280, G.343, G.344, S.345, R.347, I.348, D.371 Ligands: PO4.10 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:T.17, A:T.17, A:Y.18, A:Y.18, A:G.206, A:G.207, A:E.273, A:K.276, A:R.277, A:R.277, A:S.280, A:G.344, A:R.347 Water bridges: A:Y.18, A:K.74, A:D.371

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.7: 7 residues within 4Å: Chain A: I.31, I.32, A.33, N.34, G.37, R.39, Y.138 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:I.31, A:A.33, A:G.37, A:R.39 Water bridges: A:I.31, A:R.39, A:R.39

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.10: 8 residues within 4Å: Chain A: G.15, T.16, K.74, P.151, E.179, D.203, T.208 Ligands: AN2.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:T.16, A:T.16, A:T.208, A:T.208, A:T.208 Water bridges: A:K.74, A:K.74, A:G.206, A:T.208, A:D.210, A:D.210, A:D.210 Salt bridges: A:K.74

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 2 residues within 4Å: Chain A: R.25, Y.138 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: A.9, C.24 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain A: N.178, T.181, F.221, V.223 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mohamad, N. et al., Structures of P. falciparum Hsp70-x nucleotide binding domain with small molecule ligands. To Be Published

Release Date

2021-03-10

Peptides

Heat shock protein 70: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heat shock protein 70

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