SMTL ID : 7nrg.1

Crystal structure of a shortened IpgC variant in complex with (1R)-2-amino-1-(4-fluorophenyl)ethanol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: A.111, P.112, L.113, K.114 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: Q.77, F.78, Q.79, Q.80 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: Q.73, F.78, Q.104, R.108 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain B: D.95, Y.96, S.126, N.127, D.128, L.131 Ligand excluded by PLIP

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 6 residues within 4Å: Chain A: Y.36, Y.39, F.51, M.66, G.67, A.70 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.67 pi-Cation interactions: A:Y.39 DMS.5: 6 residues within 4Å: Chain A: Y.39, A.70, Q.73, I.74, Y.85, H.101 No protein-ligand interaction detected (PLIP)

1 x UQB: (1R)-2-amino-1-(4-fluorophenyl)ethanol(Non-covalent)

UQB.6: 11 residues within 4Å: Chain A: F.89, N.94, Y.96 Chain B: Y.85, A.86, F.89, P.98, V.99, T.102, E.117, C.118 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.89, B:V.99, B:T.102 Halogen bonds: B:Y.85

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 6 residues within 4Å: Chain A: T.97, F.100, H.101, K.130, L.131, K.134 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.134

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.9: 2 residues within 4Å: Chain B: T.16, Y.60 No protein-ligand interaction detected (PLIP)

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.10: 7 residues within 4Å: Chain B: T.97, F.100, H.101, D.128, K.130, L.131, K.134 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.134 Water bridges: B:H.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gardonyi, M. et al., Crystal structure of a shortened IpgC variant in complex with (1R)-2-amino-1-(4-fluorophenyl)ethanol. To Be Published

Release Date

2022-03-23

Peptides

Chaperone protein IpgC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Chaperone protein IpgC

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