SMTL ID : 7nro.1

Crystal structure of AlkB in complex with manganese and N-(4-((6-((carboxymethyl)carbamoyl)-5-hydroxypyridin-2-yl)amino)phenyl)-N-oxohydroxylammonium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x UPW: 2-[[6-[(4-nitrophenyl)amino]-3-oxidanyl-pyridin-2-yl]carbonylamino]ethanoic acid(Non-covalent)

UPW.1: 22 residues within 4Å: Chain A: M.57, M.61, W.69, Y.76, L.118, N.120, Y.122, L.128, H.131, Q.132, D.133, D.135, S.145, F.154, L.170, H.187, I.189, R.204, N.206, T.208, R.210 Ligands: MN.2 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.69, A:W.69, A:L.118, A:L.128 Hydrogen bonds: A:N.120, A:Y.122, A:Y.122, A:D.133, A:N.206, A:R.210 Water bridges: A:S.145, A:S.145, A:S.145, A:S.145, A:N.206 Salt bridges: A:R.204 pi-Stacking: A:H.131

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: H.131, D.133, H.187, R.210 Ligands: UPW.1 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions Metal complexes: A:H.131, A:D.133, A:H.187, UPW.1, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shishodia, S. et al., Structure-Based Design of Selective Fat Mass and Obesity Associated Protein (FTO) Inhibitors. J.Med.Chem. (2021)

Release Date

2021-10-13

Peptides

Alpha-ketoglutarate-dependent dioxygenase AlkB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase AlkB

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