SMTL ID : 7nsk.2 (1 other biounit)

Endoplasmic reticulum aminopeptidase 2 complexed with a hydroxamic ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 6 residues within 4Å: Chain A: H.83, N.85, S.88, R.226, E.227, L.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.246

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: N.219, T.255, T.256, V.257, K.258, Y.487 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain A: L.401, N.405, D.414, K.466, E.471 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain A: N.431, K.545 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 2 residues within 4Å: Chain A: N.650, L.653 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain A: H.370, H.374, E.393 Ligands: UQE.9 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.370, A:H.374, A:E.393

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 1 residues within 4Å: Chain A: N.103 No protein-ligand interaction detected (PLIP) NAG.8: 3 residues within 4Å: Chain A: N.119, E.136, D.167 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.119

1 x UQE: (2~{S})-3-(4-hydroxyphenyl)-~{N}-oxidanyl-2-[4-[[(5-pyridin-2-ylthiophen-2-yl)sulfonylamino]methyl]-1,2,3-triazol-1-yl]propanamide(Non-covalent)

UQE.9: 15 residues within 4Å: Chain A: E.200, P.333, G.334, A.335, E.337, V.367, H.370, E.371, H.374, E.393, Q.447, F.450, Y.455, Y.892 Ligands: ZN.6 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.333, A:V.367, A:Y.455, A:Y.892 Hydrogen bonds: A:A.335, A:K.397, A:Y.455, A:Y.892 pi-Stacking: A:H.370, A:Y.455

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mpakali, A. et al., Endoplasmic reticulum aminopeptidase 2 in complex with a phosphinic ligand. To Be Published

Release Date

2022-06-22

Peptides

Endoplasmic reticulum aminopeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Endoplasmic reticulum aminopeptidase 2

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