SMTL ID : 7nsn.1 (1 other biounit)

Multi-domain GH92 alpha-1,2-mannosidase from Neobacillus novalis: mannoimidazole complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: N.1013, Q.1014, D.1058 Ligands: MVL.5 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.1058, H2O.3, H2O.4, H2O.10 CA.2: 6 residues within 4Å: Chain A: S.48, E.50, T.254, G.257, D.389, D.390 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:S.48, A:T.254, A:G.257, A:D.389, A:D.389 CA.3: 3 residues within 4Å: Chain A: D.1182, D.1185, N.1209 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.1182, A:D.1185, H2O.1, H2O.2, H2O.7 CA.4: 6 residues within 4Å: Chain A: L.1205, D.1208, T.1210, T.1213, A.1312, E.1313 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:L.1205, A:D.1208, A:T.1210, A:T.1213, A:A.1312 CA.7: 6 residues within 4Å: Chain A: K.109, D.112, D.114, T.117, A.215, E.216 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:K.109, A:D.112, A:D.114, A:A.215, A:E.216

2 x MVL: (5R,6R,7S,8R)-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL(Non-covalent)

MVL.5: 14 residues within 4Å: Chain A: S.475, W.477, M.478, W.747, D.748, W.785, L.793, M.794, E.944, E.997, N.1013, Q.1014, D.1058 Ligands: CA.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.475, A:S.475, A:D.748, A:D.748, A:E.997, A:E.997, A:N.1013 MVL.8: 7 residues within 4Å: Chain A: N.101, E.105, K.118, L.120, F.122, D.148, R.152 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.101, A:E.105, A:E.105, A:K.118, A:D.148, A:R.152, A:R.152 pi-Cation interactions: A:R.152

1 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.6: 7 residues within 4Å: Chain A: H.908, P.912, R.920, G.924, A.925, W.926, L.1178 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.908, A:R.920, A:R.920, A:G.924, A:W.926

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kolaczkowski, B.M. et al., Structural and functional characterization of a multi-domain GH92 alpha-1,2-mannosidase from Neobacillus novalis. Acta Crystallogr D Struct Biol (2023)

Release Date

2022-09-21

Peptides

GH92 alpha-1,2-mannosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GH92 alpha-1,2-mannosidase

Related Entries With Identical Sequence