SMTL ID : 7nt0.2 (1 other biounit)

Drosophila PGRP-LB Y78F mutant in complex with tracheal cytotoxin (TCT)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.44, H.154, C.162 Ligands: MLD.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.44, A:H.154, A:C.162

1 x MLD: GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA(Non-covalent)

MLD.2: 19 residues within 4Å: Chain A: A.6, N.7, H.44, H.45, H.69, R.73, W.75, N.76, F.80, R.94, A.101, H.102, A.103, P.104, K.105, N.107, H.154, C.162 Ligands: ZN.1 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:A.6, A:W.75, A:W.75, A:A.101, A:P.104 Hydrogen bonds: A:N.7, A:N.7, A:R.73, A:R.73, A:N.76, A:H.102, A:K.105, A:N.107 Water bridges: A:E.32, A:E.32, A:E.32, A:W.75, A:G.100, A:N.107, A:N.107 Salt bridges: A:R.94, A:H.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orlans, J. et al., PGRP-LB: An Inside View into the Mechanism of the Amidase Reaction. Int J Mol Sci (2021)

Release Date

2021-05-19

Peptides

Isoform A of Peptidoglycan-recognition protein LB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
BBB

Isoform A of Peptidoglycan-recognition protein LB

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