SMTL ID : 7ntk.2 (3 other biounits)

PALS1 PDZ1 domain with SARS-CoV-2_E PBM complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ARG- VAL- PRO- ASP- LEU- LEU- VAL: Envelope small membrane protein(Non-covalent)

ARG-VAL-PRO-ASP-LEU-LEU-VAL.1: 17 residues within 4Å: Chain A: K.12, P.17, L.18, G.19, A.20, T.21, V.22, R.23, N.24, E.25, S.32, V.35, V.65, N.66, V.68, F.69, L.72 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.35, A:V.65, A:L.72 Hydrogen bonds: A:L.18, A:G.19, A:A.20, A:A.20, A:V.22, A:V.22, A:S.32 Water bridges: A:K.12

1 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 3 residues within 4Å: Chain A: R.33, V.35, K.36 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.36 Salt bridges: A:R.33

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: P.2, L.3, L.53, R.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.61 Water bridges: A:P.2 EDO.4: 1 residues within 4Å: Chain A: H.47 No protein-ligand interaction detected (PLIP) EDO.5: 1 residues within 4Å: Chain A: L.45 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Javorsky, A. et al., Structural basis of coronavirus E protein interactions with human PALS1 PDZ domain. Commun Biol (2021)

Release Date

2021-06-16

Peptides

MAGUK p55 subfamily member 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

MAGUK p55 subfamily member 5

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