SMTL ID : 7nud.1

Crystal structure of mouse PRMT6 in complex with inhibitor EML734

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x LRZ: methyl 6-[3-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]propylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate(Non-covalent)

LRZ.1: 27 residues within 4Å: Chain A: D.47, Y.50, Y.51, Y.54, H.60, M.63, G.93, A.94, G.95, V.114, E.115, A.116, S.117, I.119, G.141, P.142, V.143, E.144, E.158, W.159, M.160, G.161, E.167, S.168, M.169, S.172, R.354 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:D.47, A:Y.50, A:Y.54 Hydrogen bonds: A:D.47, A:Y.54, A:G.93, A:A.116, A:S.117, A:S.117, A:S.117, A:V.143, A:E.144, A:E.167 Water bridges: A:E.158, A:E.158 Salt bridges: A:E.158 LRZ.2: 24 residues within 4Å: Chain B: Y.51, Y.54, H.60, G.93, A.94, G.95, V.114, E.115, A.116, S.117, I.119, G.141, P.142, V.143, E.144, E.158, W.159, M.160, G.161, E.167, S.168, M.169, S.172, R.354 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Y.54, B:A.116 Hydrogen bonds: B:Y.54, B:Y.54, B:G.93, B:A.116, B:S.117, B:S.117, B:V.143, B:E.144, B:E.167 Water bridges: B:E.158, B:E.158 Salt bridges: B:E.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iannelli, G. et al., Turning Nonselective Inhibitors of Type I Protein Arginine Methyltransferases into Potent and Selective Inhibitors of Protein Arginine Methyltransferase 4 through a Deconstruction-Reconstruction and Fragment-Growing Approach. J.Med.Chem. (2022)

Release Date

2022-03-23

Peptides

Protein arginine N-methyltransferase 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein arginine N-methyltransferase 6

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