SMTL ID : 7nuu.1

Crystal structure of human AMDHD2 in complex with Zn

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: Q.71, E.143, H.155, H.211, T.231, H.232 Ligands: GOL.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.143, A:H.211, A:H.232 ZN.3: 7 residues within 4Å: Chain B: Q.71, E.143, H.155, H.211, T.231, H.232 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.143, B:H.211, B:H.232

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 14 residues within 4Å: Chain A: Q.71, N.73, V.111, E.143, A.154, H.155, H.211, H.232, D.294, I.296, L.308, S.329, G.330 Ligands: ZN.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.71, A:D.294 Water bridges: A:N.73 GOL.4: 13 residues within 4Å: Chain B: Q.71, N.73, V.111, E.143, A.154, H.155, H.211, H.232, D.294, I.296, L.308, G.330 Ligands: ZN.3 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.71, B:N.73, B:H.155, B:D.294 Water bridges: B:N.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kroef, V. et al., GFPT2/GFAT2 and AMDHD2 act in tandem to control the hexosamine pathway. Elife (2022)

Release Date

2021-04-28

Peptides

N-acetylglucosamine-6-phosphate deacetylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N-acetylglucosamine-6-phosphate deacetylase

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