SMTL ID : 7nxc.1

Crystal structure of the receptor binding domain of SARS-CoV-2 P.1 variant Spike glycoprotein in complex with ACE2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.14 Å

Oligo State

hetero-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: E.294, N.304, M.305, W.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.304 NAG.2: 3 residues within 4Å: Chain A: K.8, N.72, T.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.8 NAG.3: 3 residues within 4Å: Chain A: N.35, T.37, Q.322 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.35, A:N.35 NAG.4: 5 residues within 4Å: Chain A: Q.63, N.85, A.175, N.176, H.177 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.85 NAG.5: 3 residues within 4Å: Chain B: G.16, N.20, L.45 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.45 Hydrogen bonds: B:N.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dejnirattisai, W. et al., Antibody evasion by the P.1 strain of SARS-CoV-2. Cell (2021)

Release Date

2021-04-07

Peptides

Processed angiotensin-converting enzyme 2: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Processed angiotensin-converting enzyme 2

Spike protein S1

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