SMTL ID : 7nxx.1

Structure of Superoxide Dismutase 1 (SOD1) in complex with nanobody 2 (Nb2).

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

hetero-2-2-mer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.46, H.48, H.63, H.120 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.46, A:H.48, A:H.120 CU.3: 4 residues within 4Å: Chain C: H.46, H.48, H.63, H.120 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.46, C:H.48, C:H.120

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.63, H.71, H.80, D.83, K.136 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.71, A:H.80, A:D.83, A:D.83 ZN.4: 5 residues within 4Å: Chain C: H.63, H.71, H.80, D.83, K.136 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.71, C:H.80, C:D.83, C:D.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van der Kant, R. et al., Identification and rational improvement of a nanobody that suppresses aggregation of mutant SOD1. To Be Published

Release Date

2022-09-28

Peptides

Superoxide dismutase [Cu-Zn]: AC
nanobody 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Superoxide dismutase [Cu-Zn]

nanobody 2

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