SMTL ID : 7nyn.1 (5 other biounits)

Mutant Y526A of SH3 domain of JNK-interacting Protein 1 (JIP1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-dimer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: Y.38 Chain B: R.12 Ligands: EDO.4 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Water bridges: B:R.12, B:R.12 Salt bridges: B:R.12 Hydrogen bonds: A:Y.38, A:Y.38

3 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 5 residues within 4Å: Chain A: I.10, Y.38, A.55, Y.56, A.58 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.60 1PE.3: 3 residues within 4Å: Chain A: R.16, H.17, E.18 No protein-ligand interaction detected (PLIP) 1PE.6: 7 residues within 4Å: Chain A: F.11 Chain B: Q.34, A.55, Y.56, A.58, I.59 Ligands: PG4.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.56

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: A.35, E.36, Y.38 Ligands: PO4.1 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 5 residues within 4Å: Chain B: Q.34, A.35, E.36, Y.38 Ligands: 1PE.6 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Y.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marino Perez, L. et al., Visualizing protein breathing motions associated with aromatic ring flipping. Nature (2022)

Release Date

2021-12-22

Peptides

SH3 domain of JNK-interacting Protein 1 (JIP1): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

SH3 domain of JNK-interacting Protein 1 (JIP1)

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