SMTL ID : 7o04.1

Crystal structure of a shortened IpgC variant in complex with [(2-chloro-5-nitrophenyl)methyl](methyl)amine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-dimer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 1 residues within 4Å: Chain A: D.25 No protein-ligand interaction detected (PLIP) MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain B: D.128 No protein-ligand interaction detected (PLIP)

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: A.111, P.112, L.113, K.114 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: Q.73, F.78, R.108 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: A.111, P.112, L.113, K.114 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain B: G.1, S.2, I.3, Q.80, L.84 Ligand excluded by PLIP

1 x 4AV: 1-(2-chloro-5-nitrophenyl)-N-methylmethanamine(Non-covalent)

4AV.5: 3 residues within 4Å: Chain A: S.137, Y.138, A.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.137 pi-Stacking: A:Y.138

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 5 residues within 4Å: Chain A: L.113, K.116, L.139, I.142, Q.143 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.116 Water bridges: A:L.139 PEG.10: 5 residues within 4Å: Chain B: T.97, H.101, K.130, L.131, K.134 2 PLIP interactions: 2 interactions with chain B Water bridges: B:H.101, B:K.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gardonyi, M. et al., Crystal structure of a shortened IpgC variant in complex with [(2-chloro-5-nitrophenyl)methyl](methyl)amine. To be published

Release Date

2022-04-13

Peptides

Chaperone protein IpgC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Chaperone protein IpgC

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