SMTL ID : 7o1k.1

Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme alpha-E141A, beta-C92A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

hetero-2-2-mer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: S.528, G.532, L.571, M.576, I.579 Ligands: GOL.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.528 GOL.2: 6 residues within 4Å: Chain A: S.457, H.478, F.480, S.528, I.531 Ligands: GOL.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.457, A:S.457 GOL.3: 3 residues within 4Å: Chain A: G.725, D.726, R.727 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.726, A:R.727, A:R.727 GOL.10: 7 residues within 4Å: Chain B: S.457, H.478, F.480, T.527, S.528, I.531, L.571 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.457, B:T.527 GOL.11: 5 residues within 4Å: Chain B: Q.179, F.182, V.183, F.261, N.264 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.179, B:F.261 GOL.20: 9 residues within 4Å: Chain C: I.36, L.39, R.40, H.43, L.46, E.48, I.51, M.79, M.268 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.43, C:E.48 GOL.21: 5 residues within 4Å: Chain C: M.134, F.146, M.299, G.391, G.392 No protein-ligand interaction detected (PLIP) GOL.31: 8 residues within 4Å: Chain D: L.39, R.40, L.46, E.48, I.51, M.79, L.115, M.268 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:H.43, D:E.48

28 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: P.647, L.648 Chain D: H.243 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain A: H.7, H.8, H.9, H.10, Q.12 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain A: R.343, K.419 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain A: R.614, G.626, K.627, R.628 Ligand excluded by PLIP SO4.9: 2 residues within 4Å: Chain A: S.674, T.675 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain B: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: P.647, L.648 Chain C: H.243 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain B: R.343, K.419 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain B: G.709, K.710, A.711 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: S.674, T.675 Ligand excluded by PLIP SO4.17: 1 residues within 4Å: Chain B: K.616 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain B: R.614, K.627, R.628 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain B: D.27, A.28 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain C: S.163, R.164, N.249 Ligand excluded by PLIP SO4.23: 1 residues within 4Å: Chain C: R.382 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain A: V.290, D.291 Chain C: H.24 Ligand excluded by PLIP SO4.25: 2 residues within 4Å: Chain C: R.382, R.402 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain C: R.195, L.201 Ligand excluded by PLIP SO4.27: 4 residues within 4Å: Chain C: R.173, K.177, D.345, E.346 Ligand excluded by PLIP SO4.28: 2 residues within 4Å: Chain C: P.193, R.195 Ligand excluded by PLIP SO4.29: 2 residues within 4Å: Chain C: T.317, V.318 Ligand excluded by PLIP SO4.30: 6 residues within 4Å: Chain B: K.267 Chain C: G.232, G.233, F.234, D.235, D.236 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain D: S.163, R.164, N.249, V.251 Ligand excluded by PLIP SO4.33: 2 residues within 4Å: Chain D: R.382, R.402 Ligand excluded by PLIP SO4.34: 4 residues within 4Å: Chain B: Q.289, V.290, D.291 Chain D: H.24 Ligand excluded by PLIP SO4.35: 2 residues within 4Å: Chain D: R.195, L.201 Ligand excluded by PLIP SO4.36: 2 residues within 4Å: Chain D: P.193, R.195 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dalwani, S. et al., Substrate specificity and conformational flexibility properties of the Mycobacterium tuberculosis beta-oxidation trifunctional enzyme. J.Struct.Biol. (2021)

Release Date

2021-08-25

Peptides

3-hydroxyacyl-CoA dehydrogenase: AB
Putative acyltransferase Rv0859: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-hydroxyacyl-CoA dehydrogenase

Putative acyltransferase Rv0859

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