SMTL ID : 7o1u.1

X-ray structure of furin in complex with the guanylhydrazone-based inhibitor 1 (BEV241)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x UYN: [[(2E)-2-[1-[3-[(E)-N-[[azaniumylidene(azanyl)methyl]amino]-C-methyl-carbonimidoyl]-5-azanyl-phenyl]ethylidene]hydrazinyl]-azanyl-methylidene]azanium(Non-covalent)

UYN.1: 19 residues within 4Å: Chain A: D.46, H.87, L.120, D.121, G.122, E.123, V.124, S.146, W.147, G.148, P.149, E.150, D.151, W.184, A.185, G.187, D.199, S.261 Ligands: CA.4 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.120 Hydrogen bonds: A:L.120, A:G.122, A:S.146, A:S.146, A:S.146, A:G.148, A:P.149, A:P.149 Water bridges: A:V.124, A:V.124, A:W.184 Salt bridges: A:D.151, A:D.199

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.67, D.70, D.72, D.74, R.118 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.67, A:D.72, A:D.74, H2O.8, H2O.16 CA.3: 8 residues within 4Å: Chain A: D.8, D.55, V.98, A.99, N.101, V.103, G.105, V.106 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.8, A:D.55, A:V.98, A:V.103, A:G.105 CA.4: 7 residues within 4Å: Chain A: D.151, G.187, D.194, C.196, D.199, E.224 Ligands: UYN.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.194, A:E.224, H2O.4, H2O.11, H2O.14

4 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: T.202, S.204, T.207, S.209, M.427 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.207, A:S.209, A:S.209 NA.6: 2 residues within 4Å: Chain A: T.306, N.307 4 PLIP interactions: 4 interactions with chain A Water bridges: A:T.306, A:M.402, A:M.402, A:T.404 NA.7: 4 residues within 4Å: Chain A: D.157, G.158, A.160 Ligands: NA.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.158, A:G.158 Water bridges: A:A.160 NA.8: 1 residues within 4Å: Ligands: NA.7 4 PLIP interactions: 4 interactions with chain A Water bridges: A:V.124, A:E.129, A:D.157, A:D.157

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 3 residues within 4Å: Chain A: Y.206, K.342, Y.464 Ligand excluded by PLIP

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.10: 8 residues within 4Å: Chain A: V.156, D.157, R.391, D.419, G.420, F.421, N.422, W.424 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.422 DMS.11: 2 residues within 4Å: Chain A: Y.79, R.250 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.76, A:R.250 pi-Cation interactions: A:Y.79 DMS.12: 4 residues within 4Å: Chain A: D.70, Q.76, R.78, R.118 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.70 DMS.13: 4 residues within 4Å: Chain A: V.219, A.301, N.302, S.316 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.302

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.14: 3 residues within 4Å: Chain A: L.178, N.280, T.336 4 PLIP interactions: 4 interactions with chain A Water bridges: A:N.280, A:N.280, A:T.336, A:T.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dahms, S.O. et al., OFF-State-Specific Inhibition of the Proprotein Convertase Furin. Acs Chem.Biol. (2021)

Release Date

2021-09-01

Peptides

Furin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Furin

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