SMTL ID : 7o85.1

Anthrax toxin prepore in complex with the neutralizing Fab cAb29

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-7-7-7-mer

Ligands

14 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: D.6, D.8, E.15, S.49, K.52, D.62 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.6, A:E.15, A:S.49, A:K.52, A:D.62 CA.2: 8 residues within 4Å: Chain A: D.4, D.6, D.8, I.10, P.11, D.12, E.15 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.6, A:D.6, A:D.8, A:D.12, A:E.15 CA.3: 7 residues within 4Å: Chain D: D.6, D.8, E.15, S.49, K.52, D.62 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.6, D:E.15, D:S.49, D:K.52, D:D.62 CA.4: 8 residues within 4Å: Chain D: D.4, D.6, D.8, I.10, P.11, D.12, E.15 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.6, D:D.6, D:D.8, D:D.12, D:E.15 CA.5: 7 residues within 4Å: Chain G: D.6, D.8, E.15, S.49, K.52, D.62 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:D.6, G:E.15, G:S.49, G:K.52, G:D.62 CA.6: 8 residues within 4Å: Chain G: D.4, D.6, D.8, I.10, P.11, D.12, E.15 Ligands: CA.5 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:D.6, G:D.6, G:D.8, G:D.12, G:E.15 CA.7: 7 residues within 4Å: Chain J: D.6, D.8, E.15, S.49, K.52, D.62 Ligands: CA.8 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:D.6, J:E.15, J:S.49, J:K.52, J:D.62 CA.8: 8 residues within 4Å: Chain J: D.4, D.6, D.8, I.10, P.11, D.12, E.15 Ligands: CA.7 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:D.6, J:D.6, J:D.8, J:D.12, J:E.15 CA.9: 7 residues within 4Å: Chain M: D.6, D.8, E.15, S.49, K.52, D.62 Ligands: CA.10 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:D.6, M:E.15, M:S.49, M:K.52, M:D.62 CA.10: 8 residues within 4Å: Chain M: D.4, D.6, D.8, I.10, P.11, D.12, E.15 Ligands: CA.9 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:D.6, M:D.6, M:D.8, M:D.12, M:E.15 CA.11: 7 residues within 4Å: Chain P: D.6, D.8, E.15, S.49, K.52, D.62 Ligands: CA.12 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:D.6, P:E.15, P:S.49, P:K.52, P:D.62 CA.12: 8 residues within 4Å: Chain P: D.4, D.6, D.8, I.10, P.11, D.12, E.15 Ligands: CA.11 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:D.6, P:D.6, P:D.8, P:D.12, P:E.15 CA.13: 7 residues within 4Å: Chain S: D.6, D.8, E.15, S.49, K.52, D.62 Ligands: CA.14 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:D.6, S:E.15, S:S.49, S:K.52, S:D.62 CA.14: 8 residues within 4Å: Chain S: D.4, D.6, D.8, I.10, P.11, D.12, E.15 Ligands: CA.13 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:D.6, S:D.6, S:D.8, S:D.12, S:E.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoelzgen, F. et al., Neutralization of the anthrax toxin by antibody-mediated stapling of its membrane-penetrating loop. Acta Crystallogr D Struct Biol (2021)

Release Date

2021-04-28

Peptides

Protective antigen PA-63: ADGJMPS
Fab: BEHKNQT
Fab: CFILORU

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

J
J

M
M

P
P

S
S

B
B

E
E

H
H

K
K

N
N

Q
Q

T
T

C
C

F
F

I
I

L
L

O
O

R
R

U
U

Protective antigen PA-63

Fab

Fab