SMTL ID : 7o9h.1

Escherichia coli FtsY in complex with pppGpp

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x 0O2: guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate)(Non-covalent)

0O2.1: 14 residues within 4Å: Chain A: V.110, N.111, G.112, V.113, G.114, K.115, T.116, T.117, D.191, K.256, D.258, G.281, V.282, G.283 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.112, A:V.113, A:G.114, A:K.115, A:T.116, A:T.116, A:T.117, A:T.117, A:K.256, A:G.283 Water bridges: A:T.116, A:D.139, A:R.142, A:Q.148 Salt bridges: A:D.258 0O2.2: 16 residues within 4Å: Chain B: V.110, N.111, G.112, V.113, G.114, K.115, T.116, T.117, R.142, D.191, T.255, K.256, D.258, G.281, V.282, G.283 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:N.111, B:G.112, B:V.113, B:G.114, B:K.115, B:T.116, B:T.116, B:T.117, B:T.117, B:D.139, B:K.256, B:K.256, B:G.283 Water bridges: B:R.142, B:R.142 Salt bridges: B:R.142, B:D.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Czech, L. et al., Inhibition of SRP-dependent protein secretion by the bacterial alarmone (p)ppGpp. Nat Commun (2022)

Release Date

2022-02-02

Peptides

Signal recognition particle receptor FtsY: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Signal recognition particle receptor FtsY