SMTL ID : 7o9p.1

Crystal structure of the Awp3b (adhesin-like wall protein 3b) A-domain from Candida glabrata showing a gadolinium cluster

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

42 x GD: GADOLINIUM ATOM(Non-covalent)(Non-functional Binders)

GD.1: 6 residues within 4Å: Chain A: K.124, R.125, G.154, E.156, D.184 Ligands: GD.41 Ligand excluded by PLIP GD.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP GD.3: 5 residues within 4Å: Chain A: Q.117, E.147 Ligands: GD.5, GD.16, GD.17 Ligand excluded by PLIP GD.4: 2 residues within 4Å: Chain A: E.85, E.121 Ligand excluded by PLIP GD.5: 6 residues within 4Å: Chain A: E.147, E.149, K.180 Ligands: GD.3, GD.16, GD.17 Ligand excluded by PLIP GD.6: 1 residues within 4Å: Ligands: GD.7 Ligand excluded by PLIP GD.7: 4 residues within 4Å: Chain A: N.196, D.198, Q.221 Ligands: GD.6 Ligand excluded by PLIP GD.8: 1 residues within 4Å: Chain A: S.338 Ligand excluded by PLIP GD.9: 4 residues within 4Å: Ligands: GD.10, GD.12, GD.15, GD.29 Ligand excluded by PLIP GD.10: 4 residues within 4Å: Chain A: E.74 Ligands: GD.9, GD.12, GD.15 Ligand excluded by PLIP GD.11: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP GD.12: 3 residues within 4Å: Ligands: GD.9, GD.10, GD.15 Ligand excluded by PLIP GD.13: 1 residues within 4Å: Chain A: E.213 Ligand excluded by PLIP GD.14: 1 residues within 4Å: Chain A: E.309 Ligand excluded by PLIP GD.15: 4 residues within 4Å: Ligands: GD.9, GD.10, GD.12, GD.25 Ligand excluded by PLIP GD.16: 3 residues within 4Å: Ligands: GD.3, GD.5, GD.17 Ligand excluded by PLIP GD.17: 3 residues within 4Å: Ligands: GD.3, GD.5, GD.16 Ligand excluded by PLIP GD.18: 1 residues within 4Å: Chain A: D.279 Ligand excluded by PLIP GD.19: 3 residues within 4Å: Ligands: GD.20, GD.27, GD.34 Ligand excluded by PLIP GD.20: 4 residues within 4Å: Ligands: GD.19, GD.27, GD.34, GD.36 Ligand excluded by PLIP GD.21: 2 residues within 4Å: Ligands: GD.22, GD.24 Ligand excluded by PLIP GD.22: 5 residues within 4Å: Chain A: D.55 Ligands: GD.21, GD.23, GD.24, GD.29 Ligand excluded by PLIP GD.23: 4 residues within 4Å: Ligands: GD.22, GD.24, GD.25, GD.26 Ligand excluded by PLIP GD.24: 4 residues within 4Å: Chain A: D.55 Ligands: GD.21, GD.22, GD.23 Ligand excluded by PLIP GD.25: 3 residues within 4Å: Ligands: GD.15, GD.23, GD.26 Ligand excluded by PLIP GD.26: 4 residues within 4Å: Ligands: GD.23, GD.25, GD.27, GD.28 Ligand excluded by PLIP GD.27: 5 residues within 4Å: Ligands: GD.19, GD.20, GD.26, GD.28, GD.34 Ligand excluded by PLIP GD.28: 2 residues within 4Å: Ligands: GD.26, GD.27 Ligand excluded by PLIP GD.29: 2 residues within 4Å: Ligands: GD.9, GD.22 Ligand excluded by PLIP GD.30: 3 residues within 4Å: Chain A: D.331, S.332, G.333 Ligand excluded by PLIP GD.31: 4 residues within 4Å: Chain A: A.225, A.243, N.244, T.245 Ligand excluded by PLIP GD.32: 1 residues within 4Å: Chain A: D.49 Ligand excluded by PLIP GD.33: 5 residues within 4Å: Chain A: G.289, K.290, T.307, V.308, E.309 Ligand excluded by PLIP GD.34: 3 residues within 4Å: Ligands: GD.19, GD.20, GD.27 Ligand excluded by PLIP GD.35: 3 residues within 4Å: Ligands: GD.36, GD.37, GD.38 Ligand excluded by PLIP GD.36: 3 residues within 4Å: Ligands: GD.20, GD.35, GD.37 Ligand excluded by PLIP GD.37: 3 residues within 4Å: Ligands: GD.35, GD.36, GD.38 Ligand excluded by PLIP GD.38: 2 residues within 4Å: Ligands: GD.35, GD.37 Ligand excluded by PLIP GD.39: 2 residues within 4Å: Chain A: D.44, S.65 Ligand excluded by PLIP GD.40: 1 residues within 4Å: Chain A: D.145 Ligand excluded by PLIP GD.41: 4 residues within 4Å: Chain A: R.125, E.156, D.184 Ligands: GD.1 Ligand excluded by PLIP GD.42: 3 residues within 4Å: Chain A: S.247, G.248, N.268 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reithofer, V. et al., A novel class of Candida glabrata cell wall proteins with beta-helix fold mediates adhesion in clinical isolates. Plos Pathog. (2021)

Release Date

2021-12-15

Peptides

AWP3b: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

AWP3b

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