SMTL ID : 7o9x.1

Crystal structure of Human Menin with fragment 16

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x V6Q: (2-methoxyphenyl)methanamine(Non-covalent)

V6Q.1: 4 residues within 4Å: Chain A: M.259, Y.300, Y.304, E.344 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.344 pi-Stacking: A:Y.300

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: N.52, R.53, I.228, D.233, S.234, L.235, E.236 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.53, A:R.53, A:R.53, A:L.235, A:E.236 GOL.6: 6 residues within 4Å: Chain A: C.222, Y.257, M.259, N.263, Y.304 Ligands: EDO.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.257, A:Y.257, A:N.263, A:Y.304, A:Y.304

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: T.174, V.192, N.193, V.196, Y.208, R.210 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.208, A:Y.208, A:R.210 EDO.4: 5 residues within 4Å: Chain A: S.136, S.159, D.161, H.162 Ligands: GOL.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.136 EDO.5: 4 residues within 4Å: Chain A: N.263, D.266, L.267, L.270 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Groves, M.R. et al., Crystal structure of Human Menin with fragment 16. To Be Published

Release Date

2022-07-27

Peptides

Menin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Menin

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