SMTL ID : 7o9z.1

Crystal structure of Human Menin in complex with BD-08

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x V6N: (~{E})-2-cyano-3-(2~{H}-indazol-6-yl)-~{N}-(2-morpholin-4-ylethyl)prop-2-enamide(Non-covalent)

V6N.1: 11 residues within 4Å: Chain A: S.136, S.159, E.160, D.161, H.162, M.259, Y.300, M.303, Y.304, E.340, E.344 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.300, A:M.303 Hydrogen bonds: A:E.340 Water bridges: A:M.303, A:G.307, A:E.344 pi-Stacking: A:Y.300, A:Y.304

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: D.233, L.238, N.263, D.266, L.267 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.233 EDO.5: 6 residues within 4Å: Chain A: K.291, D.296, Y.302, D.324, T.327, V.328 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.291, A:Y.302 EDO.6: 6 residues within 4Å: Chain A: H.284, Y.302, L.305, Q.320, A.321, D.324 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.324

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: E.198, N.333, R.336, G.396, S.397, P.398 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.397 GOL.4: 3 residues within 4Å: Chain A: R.187, E.198, R.336 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.336, A:R.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Groves, M.R. et al., Crystal structure of Human Menin in complex with BD-08. To Be Published

Release Date

2022-07-27

Peptides

Menin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Menin

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