SMTL ID : 7oa9.1

Crystal structure of Human Menin in complex with Fragment 21

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x V6K: (~{E})-2-cyano-3-(4-hydroxyphenyl)-~{N}-(2-morpholin-4-ylethyl)prop-2-enamide(Non-covalent)

V6K.1: 10 residues within 4Å: Chain A: S.159, E.160, D.161, H.162, M.259, Y.300, M.303, Y.304, E.340, E.344 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.300, A:M.303 Hydrogen bonds: A:M.303, A:E.344 pi-Stacking: A:Y.300, A:Y.304

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: R.53, L.56, T.57, Y.58, F.59, E.236 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.53, A:L.56, A:Y.58, A:E.236 EDO.4: 4 residues within 4Å: Chain A: N.263, D.266, L.267 Ligands: GOL.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.263 EDO.5: 4 residues within 4Å: Chain A: R.199, D.331, N.333, K.403 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.199, A:D.331, A:N.333 EDO.6: 6 residues within 4Å: Chain A: G.206, S.207, Y.208, R.210, Y.293, R.295 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.210, A:R.210, A:Y.293 EDO.7: 5 residues within 4Å: Chain A: P.272, T.273, G.275, R.276, D.278 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.273, A:G.275, A:R.276 EDO.8: 4 residues within 4Å: Chain A: G.3, L.4, A.68, Y.71 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.4 EDO.9: 5 residues within 4Å: Chain A: A.1, E.32, Q.147, G.150, R.152 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.32

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: C.222, I.224, Q.241, N.263, L.267 Ligands: EDO.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.222, A:Q.241, A:N.263, A:N.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Groves, M.R. et al., Crystal structure of Human Menin in complex with Fragment 21. To Be Published

Release Date

2022-08-03

Peptides

Isoform 2 of Menin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 2 of Menin