SMTL ID : 7oat.1

Structural basis for targeted p97 remodelling by ASPL as prerequisite for p97 trimethylation by METTL21D

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain B: D.36, N.37, R.145, L.154, R.156 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.36, B:N.37, B:R.145, B:R.156 EDO.2: 4 residues within 4Å: Chain B: Q.422, K.426, D.451, D.452 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.422, B:K.426, B:D.452 EDO.5: 4 residues within 4Å: Chain C: V.14, L.15, E.16, Y.205 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.16, C:E.16 EDO.7: 1 residues within 4Å: Chain C: D.19 No protein-ligand interaction detected (PLIP)

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 17 residues within 4Å: Chain B: D.206, I.207, G.208, P.248, G.249, T.250, G.251, K.252, T.253, L.254, D.305, I.381, H.385, G.409, A.410, A.413 Ligands: MG.4 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:G.208, B:G.249, B:T.250, B:T.250, B:G.251, B:G.251, B:K.252, B:T.253, B:T.253, B:L.254 Water bridges: B:K.252, B:D.305 Salt bridges: B:K.252, B:K.252

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.4: 1 residues within 4Å: Ligands: ATP.3 No protein-ligand interaction detected (PLIP)

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.6: 23 residues within 4Å: Chain B: K.316, H.318 Chain C: G.34, V.36, V.37, W.38, A.41, E.68, G.70, S.71, G.72, T.73, D.91, L.92, L.95, L.119, K.120, W.121, A.138, D.139, Y.142, Y.143, E.145 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:W.38, C:G.70, C:L.92, C:K.120, C:W.121, C:A.138, C:Y.143, C:E.145 pi-Stacking: C:W.121, C:W.121, C:W.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrovic, S. et al., Structural remodeling of AAA+ ATPase p97 by adaptor protein ASPL facilitates posttranslational methylation by METTL21D. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2022-08-03

Peptides

Tether containing UBX domain for GLUT4: A
Transitional endoplasmic reticulum ATPase: B
Protein-lysine methyltransferase METTL21D: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Tether containing UBX domain for GLUT4

Transitional endoplasmic reticulum ATPase

Protein-lysine methyltransferase METTL21D

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