SMTL ID : 7odd.1

Crystal structure of bovine Hsc70(aa1-554)E213A/D214A in complex with tricine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: I.181, A.182, K.187, Y.371 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.371, A:Y.371 GOL.2: 7 residues within 4Å: Chain A: Y.149, D.206, T.222, A.223, G.224, D.225, T.226 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.206, A:T.222, A:T.222 Water bridges: A:V.207, A:A.223 GOL.3: 7 residues within 4Å: Chain A: T.13, K.71, R.72, R.76, Y.149, F.150, T.226 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.13, A:T.13, A:K.71, A:R.76

1 x VLS: N-[1,3-dihydroxy-2-(hydroxymethyl)propan-2-yl]glycine(Non-covalent)

VLS.4: 13 residues within 4Å: Chain A: D.10, G.12, T.13, Y.15, K.71, E.175, D.199, G.201, T.204, V.337, G.338, V.369 Ligands: K.7 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.13, A:Y.15, A:E.175 Water bridges: A:T.14, A:Y.15, A:D.199 Salt bridges: A:K.71

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.5: 6 residues within 4Å: Chain A: D.452, N.453, N.454, L.455, R.517, E.521 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.454, A:L.455, A:R.517, A:E.521

2 x K: POTASSIUM ION(Non-covalent)

K.6: 5 residues within 4Å: Chain A: D.10, L.11, K.71, T.145, E.175 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.10, A:T.145, A:T.145, A:E.175 K.7: 4 residues within 4Å: Chain A: D.199, T.204, D.206 Ligands: VLS.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zehe, M. et al., Combined In-Solution Fragment Screening and Crystallographic Binding-Mode Analysis with a Two-Domain Hsp70 Construct. Acs Chem.Biol. (2024)

Release Date

2022-06-01

Peptides

Heat shock cognate 71 kDa protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heat shock cognate 71 kDa protein

Related Entries With Identical Sequence