SMTL ID : 7oe4.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N-methyl-4-propionyl-1H-pyrrole-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.104 EDO.2: 3 residues within 4Å: Chain A: K.62, D.67, E.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.62, A:K.62, A:E.73 EDO.3: 4 residues within 4Å: Chain A: Y.86, K.87, Y.88, N.89 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.87 EDO.4: 3 residues within 4Å: Chain A: W.30, M.98 Ligands: V9B.6 No protein-ligand interaction detected (PLIP)

1 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.5: 8 residues within 4Å: Chain A: M.3, S.7, L.10, K.11, N.14, M.63, E.64, R.66 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.66 Hydrogen bonds: A:K.11, A:N.14

1 x V9B: N-methyl-4-propanoyl-1H-pyrrole-2-carboxamide(Non-covalent)

V9B.6: 8 residues within 4Å: Chain A: P.31, F.32, V.36, L.41, L.43, N.89, V.95 Ligands: EDO.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.43 Hydrogen bonds: A:N.89, A:N.89 Water bridges: A:P.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seal, J.T. et al., Fragment-based Scaffold Hopping: Identification of Potent, Selective, and Highly Soluble Bromo and Extra Terminal Domain (BET) Second Bromodomain (BD2) Inhibitors. J.Med.Chem. (2021)

Release Date

2021-07-28

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 2

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