SMTL ID : 7oe6.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N4-hydroxycyclohexyl-N2-methyl-5-phenylethyl-furan-2,4-dicarboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x V9K: 2N-methyl-4N-(4-oxidanylcyclohexyl)-5-[(1S)-1-phenylethyl]furan-2,4-dicarboxamide(Non-covalent)

V9K.1: 11 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.41, L.43, C.85, N.89, P.90, H.93, V.95 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.30, A:W.30, A:L.41, A:L.43, A:P.90, A:V.95, A:V.95 Hydrogen bonds: A:P.31, A:N.89, A:N.89

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.104 Water bridges: A:D.104, A:D.104 EDO.3: 3 residues within 4Å: Chain A: K.62, D.67, E.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.62, A:K.62, A:E.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seal, J.T. et al., Fragment-based Scaffold Hopping: Identification of Potent, Selective, and Highly Soluble Bromo and Extra Terminal Domain (BET) Second Bromodomain (BD2) Inhibitors. J.Med.Chem. (2021)

Release Date

2021-07-28

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 2

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