SMTL ID : 7oe8.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N5-((1R,5S,6r)-3-oxabicyclo[3.1.0]hexan-6-yl)-3-(1H-indol-4-yl)-N7-methyl-2,3-dihydrobenzofuran-5,7-dicarboxamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: K.62, D.67, E.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.62, A:K.62, A:E.73 EDO.2: 4 residues within 4Å: Chain A: Y.86, K.87, N.89, P.90 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.87, A:N.89

1 x V9Q: (3S)-3-(1H-indol-4-yl)-N7-methyl-N5-[(1R,5S)-3-oxabicyclo[3.1.0]hexan-6-yl]-2,3-dihydro-1-benzofuran-5,7-dicarboxamide(Non-covalent)

V9Q.3: 12 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.41, L.43, Y.88, N.89, P.90, H.93, V.95, M.98 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.41, A:L.41, A:L.43, A:Y.88, A:V.95, A:V.95 Hydrogen bonds: A:P.31, A:N.89, A:N.89 pi-Stacking: A:W.30, A:W.30 pi-Cation interactions: A:H.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lucas, S.C.C. et al., Optimization of a Series of 2,3-Dihydrobenzofurans as Highly Potent, Second Bromodomain (BD2)-Selective, Bromo and Extra-Terminal Domain (BET) Inhibitors. J.Med.Chem. (2021)

Release Date

2021-07-28

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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