SMTL ID : 7oed.1

Crystal structure of the human METTL3-METTL14 complex with compound UOZ019a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VB5: 4-[(4,4-dimethylpiperidin-1-yl)methyl]-~{N}-[[(3~{R})-1-[6-(methylamino)pyrimidin-4-yl]-3-oxidanyl-piperidin-3-yl]methyl]-2-oxidanyl-benzamide(Non-covalent)

VB5.1: 19 residues within 4Å: Chain A: C.42, D.43, I.44, R.45, D.61, P.62, Y.72, G.73, L.75, W.97, E.147, S.177, K.179, F.200, G.201, R.202, G.214, N.215, Q.216 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.97, A:K.179 Hydrogen bonds: A:D.43, A:I.44, A:D.61, A:F.200, A:N.215, A:Q.216 Water bridges: A:D.61, A:G.201, A:G.214, A:N.215 Salt bridges: A:D.61 pi-Stacking: A:Y.72, A:F.200

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: E.104 Chain B: R.140, R.144, R.149, R.150 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:R.144, B:R.150 Hydrogen bonds: B:R.150 Salt bridges: B:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bedi, R.K. et al., Structure-Based Design of Inhibitors of the m6A-RNA Writer Enzyme METTL3. Acs Bio Med Chem Au (2023)

Release Date

2021-10-20

Peptides

N6-adenosine-methyltransferase catalytic subunit: A
N6-adenosine-methyltransferase non-catalytic subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N6-adenosine-methyltransferase catalytic subunit

N6-adenosine-methyltransferase non-catalytic subunit

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