SMTL ID : 7oer.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N-(2,2-diphenylethyl)-1,5-dimethyl-N-(2-(methylamino)-2-oxoethyl)-6-oxo-1,6-dihydropyridine-3-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x VBH: N-(2,2-diphenylethyl)-1,5-dimethyl-N-[2-(methylamino)-2-oxidanylidene-ethyl]-6-oxidanylidene-pyridine-3-carboxamide(Non-covalent)

VBH.1: 13 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.41, L.43, C.85, Y.88, N.89, H.93, D.94, V.95, M.98 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.30, A:W.30, A:V.36, A:L.43, A:Y.88, A:D.94, A:V.95 Hydrogen bonds: A:N.89 Water bridges: A:D.37 pi-Stacking: A:H.93

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rianjongdee, F. et al., Discovery of a Highly Selective BET BD2 Inhibitor from a DNA-Encoded Library Technology Screening Hit. J.Med.Chem. (2021)

Release Date

2021-07-21

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 2

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