SMTL ID : 7oey.1

Neisseria gonnorhoeae variant E93Q at 1.35 angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-dimer

Ligands

2 x SIN: SUCCINIC ACID(Non-covalent)

SIN.1: 11 residues within 4Å: Chain A: D.18, N.44, I.47, F.202, S.204, R.205, A.259, S.260, K.264, T.285, F.340 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.202 Hydrogen bonds: A:N.44, A:S.260, A:S.260 Water bridges: A:N.44, A:K.264 Salt bridges: A:R.205, A:K.264 SIN.3: 9 residues within 4Å: Chain B: D.18, N.44, I.47, F.202, R.205, A.259, S.260, K.264, T.285 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.202 Hydrogen bonds: B:N.44, B:S.260 Water bridges: B:K.264 Salt bridges: B:R.205, B:K.264

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Q.74, E.77, T.78, V.81, R.126, A.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.77, A:R.126 GOL.4: 6 residues within 4Å: Chain B: K.219, G.220, K.221, Y.268, P.269, L.272 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.220, B:K.221 GOL.5: 4 residues within 4Å: Chain B: P.266, A.267, Y.268, P.269 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.266 Water bridges: B:D.270

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 2 residues within 4Å: Chain B: Q.232, E.235 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.235 Water bridges: B:Q.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rabe von Pappenheim, F. et al., Widespread occurrence of covalent lysine-cysteine redox switches in proteins. Nat.Chem.Biol. (2022)

Release Date

2022-02-02

Peptides

Transaldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transaldolase