SMTL ID : 7ofh.1

CryoEM structure of the outer membrane secretin pore pIV from the f1 filamentous bacteriophage.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-15-mer

Ligands

30 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)

CPS.1: 6 residues within 4Å: Chain A: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.29 Ligand excluded by PLIP CPS.2: 5 residues within 4Å: Chain A: Y.368 Chain B: F.184, K.247, L.249 Ligands: CPS.3 Ligand excluded by PLIP CPS.3: 6 residues within 4Å: Chain B: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.2 Ligand excluded by PLIP CPS.4: 5 residues within 4Å: Chain B: Y.368 Chain C: F.184, K.247, L.249 Ligands: CPS.5 Ligand excluded by PLIP CPS.5: 6 residues within 4Å: Chain C: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.4 Ligand excluded by PLIP CPS.6: 5 residues within 4Å: Chain C: Y.368 Chain D: F.184, K.247, L.249 Ligands: CPS.7 Ligand excluded by PLIP CPS.7: 6 residues within 4Å: Chain D: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.6 Ligand excluded by PLIP CPS.8: 5 residues within 4Å: Chain D: Y.368 Chain E: F.184, K.247, L.249 Ligands: CPS.9 Ligand excluded by PLIP CPS.9: 6 residues within 4Å: Chain E: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.8 Ligand excluded by PLIP CPS.10: 5 residues within 4Å: Chain E: Y.368 Chain F: F.184, K.247, L.249 Ligands: CPS.11 Ligand excluded by PLIP CPS.11: 6 residues within 4Å: Chain F: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.10 Ligand excluded by PLIP CPS.12: 5 residues within 4Å: Chain F: Y.368 Chain G: F.184, K.247, L.249 Ligands: CPS.13 Ligand excluded by PLIP CPS.13: 6 residues within 4Å: Chain G: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.12 Ligand excluded by PLIP CPS.14: 5 residues within 4Å: Chain G: Y.368 Chain H: F.184, K.247, L.249 Ligands: CPS.15 Ligand excluded by PLIP CPS.15: 6 residues within 4Å: Chain H: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.14 Ligand excluded by PLIP CPS.16: 5 residues within 4Å: Chain H: Y.368 Chain I: F.184, K.247, L.249 Ligands: CPS.17 Ligand excluded by PLIP CPS.17: 6 residues within 4Å: Chain I: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.16 Ligand excluded by PLIP CPS.18: 5 residues within 4Å: Chain I: Y.368 Chain J: F.184, K.247, L.249 Ligands: CPS.19 Ligand excluded by PLIP CPS.19: 6 residues within 4Å: Chain J: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.18 Ligand excluded by PLIP CPS.20: 5 residues within 4Å: Chain J: Y.368 Chain K: F.184, K.247, L.249 Ligands: CPS.21 Ligand excluded by PLIP CPS.21: 6 residues within 4Å: Chain K: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.20 Ligand excluded by PLIP CPS.22: 5 residues within 4Å: Chain K: Y.368 Chain L: F.184, K.247, L.249 Ligands: CPS.23 Ligand excluded by PLIP CPS.23: 6 residues within 4Å: Chain L: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.22 Ligand excluded by PLIP CPS.24: 5 residues within 4Å: Chain L: Y.368 Chain M: F.184, K.247, L.249 Ligands: CPS.25 Ligand excluded by PLIP CPS.25: 6 residues within 4Å: Chain M: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.24 Ligand excluded by PLIP CPS.26: 5 residues within 4Å: Chain M: Y.368 Chain N: F.184, K.247, L.249 Ligands: CPS.27 Ligand excluded by PLIP CPS.27: 6 residues within 4Å: Chain N: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.26 Ligand excluded by PLIP CPS.28: 5 residues within 4Å: Chain N: Y.368 Chain O: F.184, K.247, L.249 Ligands: CPS.30 Ligand excluded by PLIP CPS.29: 5 residues within 4Å: Chain A: F.184, K.247, L.249 Chain O: Y.368 Ligands: CPS.1 Ligand excluded by PLIP CPS.30: 6 residues within 4Å: Chain O: E.180, L.182, F.184, L.361, Y.403 Ligands: CPS.28 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Conners, R. et al., CryoEM structure of the outer membrane secretin channel pIV from the f1 filamentous bacteriophage. Nat Commun (2021)

Release Date

2021-11-03

Peptides

Virion export protein: ABCDEFGHIJKLMNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

Virion export protein