SMTL ID : 7ofv.1

NMR-guided design of potent and selective EphA4 agonistic ligands

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x VDK- 4PQ- BIF- HRG- GLY- VDQ: EphA4 agonist ligand(Non-covalent)

VDK-4PQ-BIF-HRG-GLY-VDQ.1: 18 residues within 4Å: Chain A: E.31, I.35, M.36, D.37, E.38, Q.47, V.48, C.49, T.80, L.81, R.82, V.133, I.135, M.140, C.167, I.168, A.169 Ligands: ACT.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.35, A:D.37, A:Q.47, A:T.80, A:V.133, A:I.135 Hydrogen bonds: A:E.31, A:M.36, A:Q.47, A:Q.47, A:Q.47, A:I.168 Water bridges: A:L.81

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 1 residues within 4Å: Ligands: VDK-4PQ-BIF-HRG-GLY-VDQ.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baggio, C. et al., NMR-Guided Design of Potent and Selective EphA4 Agonistic Ligands. J.Med.Chem. (2021)

Release Date

2021-08-11

Peptides

Ephrin type-A receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ephrin type-A receptor 4