SMTL ID : 7oik.1

Mouse RNF213:UBE2L3 transthiolation intermediate, chemically stabilized

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: A.1956, G.1957, V.1958, G.1959, K.1960, S.1961, L.1962, E.2060, A.2114, M.2115, D.2116, E.2119, F.2125, W.2173, R.2177, K.2460, S.2535 Ligands: MG.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.1957, A:V.1958, A:G.1959, A:K.1960, A:S.1961, A:L.1962, A:A.2114, A:D.2116, A:E.2119, A:R.2177, A:R.2177, A:S.2535, A:S.2535 Salt bridges: A:K.1960, A:K.1960, A:K.2460

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.1961, E.2060 Ligands: ATP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.1961, A:E.2060

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.3962, H.3964, C.3982, C.3985 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.3962, A:H.3964, A:H.3964, A:C.3982, A:C.3985 ZN.4: 4 residues within 4Å: Chain A: C.3947, C.3950, C.3967, C.3970 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.3947, A:C.3950, A:C.3967, A:C.3970

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahel, J. et al., E3 ubiquitin ligase RNF213 employs a non-canonical zinc finger active site and is allosterically regulated by ATP. To Be Published

Release Date

2022-06-01

Peptides

E3 ubiquitin-protein ligase RNF213: A
Ubiquitin-conjugating enzyme E2 L3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase RNF213

Ubiquitin-conjugating enzyme E2 L3