SMTL ID : 7oj2.1

Bacillus subtilis IMPDH in complex with Ap4A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: G.201, S.202, G.238, G.239, L.259, G.260, S.261, Y.284 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.202, A:G.239, A:G.260, A:S.261, A:Y.284, A:Y.284 Water bridges: A:I.203, A:G.238, A:I.240, A:S.261, A:S.261 PO4.4: 8 residues within 4Å: Chain B: G.201, S.202, G.238, G.239, L.259, G.260, S.261, Y.284 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.202, B:G.239, B:G.260, B:S.261, B:Y.284, B:Y.284 Water bridges: B:I.203, B:G.238, B:I.240, B:S.261, B:S.261 PO4.7: 8 residues within 4Å: Chain C: G.201, S.202, G.238, G.239, L.259, G.260, S.261, Y.284 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:S.202, C:G.239, C:G.260, C:S.261, C:Y.284, C:Y.284 Water bridges: C:I.203, C:G.238, C:I.240, C:S.261, C:S.261 PO4.10: 8 residues within 4Å: Chain D: G.201, S.202, G.238, G.239, L.259, G.260, S.261, Y.284 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:S.202, D:G.239, D:G.260, D:S.261, D:Y.284, D:Y.284 Water bridges: D:I.203, D:G.238, D:I.240, D:S.261, D:S.261

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: K.232 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.232 Water bridges: A:H.230, A:H.230, A:K.232, A:K.232 GOL.3: 5 residues within 4Å: Chain A: R.228, H.255, R.348, R.351, E.352 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.348, A:R.348, A:R.351, A:R.351, A:E.352 Water bridges: A:R.228, A:H.255 GOL.5: 1 residues within 4Å: Chain B: K.232 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.232 Water bridges: B:H.230, B:H.230, B:K.232, B:K.232 GOL.6: 5 residues within 4Å: Chain B: R.228, H.255, R.348, R.351, E.352 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.348, B:R.348, B:R.351, B:R.351, B:E.352 Water bridges: B:R.228, B:H.255 GOL.8: 1 residues within 4Å: Chain C: K.232 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:K.232 Water bridges: C:H.230, C:H.230, C:K.232, C:K.232 GOL.9: 5 residues within 4Å: Chain C: R.228, H.255, R.348, R.351, E.352 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:R.348, C:R.348, C:R.351, C:R.351, C:E.352 Water bridges: C:R.228, C:H.255 GOL.11: 1 residues within 4Å: Chain D: K.232 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:K.232 Water bridges: D:H.230, D:H.230, D:K.232, D:K.232 GOL.12: 5 residues within 4Å: Chain D: R.228, H.255, R.348, R.351, E.352 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:R.348, D:R.348, D:R.351, D:R.351, D:E.352 Water bridges: D:R.228, D:H.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Giammarinaro, P.I. et al., Diadenosine tetraphosphate regulates biosynthesis of GTP in Bacillus subtilis. Nat Microbiol (2022)

Release Date

2022-09-14

Peptides

Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase