SMTL ID : 7oja.1

SaFtsZ(D210N) complexed with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 24 residues within 4Å: Chain A: G.13, G.14, G.15, N.18, R.22, G.65, G.97, M.98, G.99, G.100, G.101, T.102, G.103, T.104, T.126, P.128, F.129, E.132, R.136, N.159, L.162, F.176, A.179 Ligands: EDO.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.14, A:G.15, A:N.18, A:R.22, A:R.22, A:G.101, A:T.102, A:T.102, A:G.103, A:E.132, A:R.136, A:R.136, A:N.159, A:N.159 Water bridges: A:G.97, A:M.98, A:T.102, A:T.102, A:E.132, A:E.132 pi-Cation interactions: A:F.176

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 12 residues within 4Å: Chain A: G.15, G.16, N.18, A.19, R.22, T.95, S.96, G.97, V.125, T.126, D.180 Ligands: GDP.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.19, A:R.22, A:S.96, A:T.126, A:D.180 EDO.3: 9 residues within 4Å: Chain A: L.193, I.194, A.195, V.196, S.197, G.198, N.201, L.202, N.203 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.201, A:L.202 Water bridges: A:L.202

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 6 residues within 4Å: Chain A: I.54, G.55, E.56, K.57, L.58, E.77 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.55, A:E.56, A:K.57 SO4.5: 3 residues within 4Å: Chain A: H.26, R.184, Q.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.185 Salt bridges: A:H.26, A:R.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruiz, F.M. et al., FtsZ filament structures in different nucleotide states reveal the mechanism of assembly dynamics. Plos Biol. (2022)

Release Date

2022-03-02

Peptides

Cell division protein FtsZ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell division protein FtsZ