SMTL ID : 7ol2.1

Crystal structure of mouse contactin 1 immunoglobulin domains

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.89 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 1 residues within 4Å: Chain A: N.240 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.2: 4 residues within 4Å: Chain A: N.439, I.445, W.446, E.447 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 2 residues within 4Å: Chain A: G.501, N.503 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 1 residues within 4Å: Chain B: N.240 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 3 residues within 4Å: Chain B: G.501, N.503, R.555 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.4: 2 residues within 4Å: Chain B: N.157, N.190 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.6: 4 residues within 4Å: Chain B: N.439, I.445, W.446, E.447 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.446 Hydrogen bonds: B:E.447

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 2 residues within 4Å: Chain A: N.157, N.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.190, A:N.190 NAG.9: 2 residues within 4Å: Chain A: H.318, N.320 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.320 NAG.10: 1 residues within 4Å: Chain A: N.476 No protein-ligand interaction detected (PLIP) NAG.11: 2 residues within 4Å: Chain B: H.318, N.320 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.318 NAG.12: 1 residues within 4Å: Chain B: N.476 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.476

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chataigner, L.M.P. et al., Structural insights into the contactin 1 - neurofascin 155 adhesion complex. Nat Commun (2022)

Release Date

2022-12-14

Peptides

Contactin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Contactin-1

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