SMTL ID : 7oli.1 (1 other biounit)

Crystal structure of Pab-AGOG in complex with 8-oxoguanosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x 8HG: 2'-DEOXY-8-OXOGUANOSINE(Non-covalent)

8HG.1: 11 residues within 4Å: Chain A: Q.27, S.54, Y.55, W.65, K.145, F.149, K.152, P.175, D.177, D.211, W.215 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:D.177 Hydrogen bonds: A:Q.27, A:Q.27, A:K.152, A:P.175 Water bridges: A:Q.56, A:K.145 Salt bridges: A:D.177, A:D.211 pi-Stacking: A:W.215, A:W.215, A:W.215 pi-Cation interactions: A:W.215

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: R.18, E.22, R.159, S.163, T.164 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.18, A:E.22, A:S.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franck, C. et al., Structural and functional determinants of the archaeal 8-oxoguanine-DNA glycosylase AGOG for DNA damage recognition and processing. Nucleic Acids Res. (2022)

Release Date

2022-06-01

Peptides

N-glycosylase/DNA lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-glycosylase/DNA lyase

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