SMTL ID : 7omp.1

SaFtsZ complexed with GDPPCP and Mg2+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

GCP.1: 31 residues within 4Å: Chain A: G.13, G.14, G.15, G.16, N.18, R.22, T.38, G.63, A.64, G.65, A.66, G.97, M.98, G.99, G.100, G.101, T.102, G.103, T.104, T.126, P.128, F.129, E.132, R.136, N.159, L.162, F.176, A.179 Ligands: MG.2, EDO.3, EDO.4 29 PLIP interactions: 29 interactions with chain A Hydrogen bonds: A:G.14, A:G.15, A:N.18, A:R.22, A:R.22, A:A.64, A:G.65, A:A.66, A:G.101, A:T.102, A:T.102, A:G.103, A:T.126, A:E.132, A:R.136, A:R.136, A:N.159, A:N.159 Water bridges: A:N.37, A:T.38, A:G.63, A:G.97, A:M.98, A:M.98, A:G.100, A:T.104, A:E.132 pi-Stacking: A:F.176 pi-Cation interactions: A:F.176

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 4 residues within 4Å: Chain A: G.63, G.65 Ligands: GCP.1, EDO.4 No protein-ligand interaction detected (PLIP)

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 12 residues within 4Å: Chain A: G.15, G.16, N.18, A.19, R.22, T.95, S.96, G.97, V.124, V.125, T.126 Ligands: GCP.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.22, A:T.95 Water bridges: A:D.180 EDO.4: 7 residues within 4Å: Chain A: G.65, A.66, G.100, G.101, R.136 Ligands: GCP.1, MG.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.66, A:R.136, A:R.136 EDO.5: 10 residues within 4Å: Chain A: L.193, I.194, A.195, V.196, S.197, G.198, N.201, L.202, D.203, F.204 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.196, A:N.201 Water bridges: A:L.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruiz, F.M. et al., FtsZ filament structures in different nucleotide states reveal the mechanism of assembly dynamics. Plos Biol. (2022)

Release Date

2022-03-02

Peptides

Cell division protein FtsZ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell division protein FtsZ

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