SMTL ID : 7ond.2 (1 other biounit)

HaloTag Engineering for Enhanced Fluorogenicity and Kinetics with a Styrylpyridine Dye

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x VF2: 4-[(E)-2-[1-(7-chloranylheptyl)pyridin-1-ium-4-yl]ethenyl]-N,N-dimethyl-aniline(Covalent)

VF2.1: 11 residues within 4Å: Chain A: N.41, D.106, W.141, P.142, A.145, F.149, P.243, G.244, A.245, N.272 Ligands: CL.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:D.106, A:P.142, A:A.145, A:F.149, A:P.243, A:P.243, A:A.245 pi-Stacking: A:W.141, A:W.141

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: N.41, W.107, F.168, F.205, P.206, L.209 Ligands: VF2.1 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain A: E.183 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.183, H2O.4, H2O.6, H2O.6, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miro-Vinyals, C. et al., HaloTag Engineering for Enhanced Fluorogenicity and Kinetics with a Styrylpyridium Dye. Chembiochem (2021)

Release Date

2021-07-21

Peptides

Haloalkane dehalogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Haloalkane dehalogenase

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