SMTL ID : 7oni.1

Structure of Neddylated CUL5 C-terminal region-RBX2-ARIH2*

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.259, C.262, H.267, C.272 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.259, B:C.262, B:H.267, B:C.272 ZN.2: 4 residues within 4Å: Chain B: C.141, C.144, C.163, C.166 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.141, B:C.144, B:C.163, B:C.166 ZN.3: 4 residues within 4Å: Chain B: C.230, C.235, C.251, C.254 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.230, B:C.235, B:C.251, B:C.254 ZN.4: 4 residues within 4Å: Chain B: C.158, H.160, C.185, C.190 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.158, B:H.160, B:C.185, B:C.190 ZN.5: 4 residues within 4Å: Chain C: C.48, C.51, H.83, C.86 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.48, C:C.51, C:H.83, C:C.86 ZN.6: 4 residues within 4Å: Chain C: C.59, C.62, C.71, C.85 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.59, C:C.62, C:C.71, C:C.85 ZN.7: 4 residues within 4Å: Chain C: C.78, H.80, C.97, C.100 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.78, C:H.80, C:C.97, C:C.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kostrhon, S. et al., CUL5-ARIH2 E3-E3 ubiquitin ligase structure reveals cullin-specific NEDD8 activation. Nat.Chem.Biol. (2021)

Release Date

2021-09-15

Peptides

Cullin-5: A
E3 ubiquitin-protein ligase ARIH2: B
RING-box protein 2: C
NEDD8: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

C
R

D
N

Cullin-5

E3 ubiquitin-protein ligase ARIH2

RING-box protein 2

NEDD8