SMTL ID : 7onr.1 (1 other biounit)

PARP1 catalytic domain in complex with 8-chloroquinazolinone-based inhibitor (compound 9)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x VKW: 8-chloranyl-2-[3-[4-(1,5-dimethylimidazol-2-yl)piperazin-1-yl]propyl]-3~{H}-quinazolin-4-one(Non-covalent)

VKW.1: 16 residues within 4Å: Chain A: D.107, N.108, L.110, D.111, H.203, G.204, N.209, R.219, I.220, A.221, Y.237, F.238, A.239, S.245, Y.248, E.329 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.110, A:R.219, A:Y.237, A:Y.248, A:E.329 Hydrogen bonds: A:G.204, A:G.204 Water bridges: A:R.219 pi-Stacking: A:Y.248

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.244, L.325, L.326, Y.327 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.326, A:Y.327 Water bridges: A:K.244, A:E.329 Salt bridges: A:K.244 SO4.3: 2 residues within 4Å: Chain A: K.44, R.45 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.44, A:K.44, A:K.44 Salt bridges: A:K.44, A:R.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johannes, J.W. et al., Discovery of 5-{4-[(7-Ethyl-6-oxo-5,6-dihydro-1,5-naphthyridin-3-yl)methyl]piperazin-1-yl}- N -methylpyridine-2-carboxamide (AZD5305): A PARP1-DNA Trapper with High Selectivity for PARP1 over PARP2 and Other PARPs. J.Med.Chem. (2021)

Release Date

2021-09-15

Peptides

Poly [ADP-ribose] polymerase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly [ADP-ribose] polymerase 1

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