SMTL ID : 7ooj.1 (1 other biounit)

Structure of D-Thr53 Ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

4 x CD: CADMIUM ION(Non-covalent)

CD.1: 1 residues within 4Å: Chain A: E.18 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.18, A:E.18 CD.2: 2 residues within 4Å: Chain A: K.63, E.64 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.64, A:E.64, H2O.1, H2O.1 CD.3: 2 residues within 4Å: Chain A: M.1, E.16 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:M.1, A:E.16, A:E.16 CD.4: 1 residues within 4Å: Chain A: D.58 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chakrabarti, K.S. et al., A litmus test for classifying recognition mechanisms of transiently binding proteins. Nat Commun (2022)

Release Date

2022-05-18

Peptides

Ubiquitin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin

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