SMTL ID : 7op0.1

Crystal structure of complement C5 in complex with chemically synthesized K92 knob domain.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: S.183, N.232, N.234, V.247 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: R.383, Y.389, L.409, Q.418, N.419, S.422, I.423 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.418, A:N.419, A:S.422 EDO.3: 6 residues within 4Å: Chain A: Y.343, H.346, Q.411, K.477, E.618, E.622 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.477, A:K.477, A:E.622

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Macpherson, A. et al., The Chemical Synthesis of Knob Domain Antibody Fragments. Acs Chem.Biol. (2021)

Release Date

2022-04-06

Peptides

Complement C5 alpha chain: A
Complement C5 beta chain: B
K92chemFE: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Complement C5 alpha chain

Complement C5 beta chain

K92chemFE

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