- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x OMP: OROTIDINE-5'-MONOPHOSPHATE(Non-covalent)
OMP.4: 21 residues within 4Å:- Chain A: S.34, D.36, K.58, H.60, D.89, K.91, N.118, M.148, S.149, I.178, P.194, Q.207, Y.209, I.225, V.226, G.227, R.228
- Chain B: D.94, I.95, T.98
- Ligands: U.5
23 PLIP interactions:21 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:I.178, A:P.194
- Hydrogen bonds: A:S.34, A:D.36, A:K.58, A:N.118, A:S.149, A:S.149, A:S.149, A:Q.207, A:Y.209, A:Y.209, A:Y.209, A:G.227, A:R.228, B:T.98, B:T.98
- Water bridges: A:G.195, A:G.195, A:Q.197, A:G.229
- Salt bridges: A:K.58, A:R.228
OMP.9: 21 residues within 4Å:- Chain A: D.94, I.95, T.98
- Chain B: S.34, D.36, K.58, H.60, D.89, K.91, N.118, M.148, S.149, I.178, P.194, Q.207, Y.209, I.225, V.226, G.227, R.228
- Ligands: U.10
19 PLIP interactions:18 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:I.178, B:P.194
- Hydrogen bonds: B:S.34, B:D.36, B:K.58, B:N.118, B:S.149, B:S.149, B:S.149, B:Q.207, B:Y.209, B:Y.209, B:G.227, B:R.228, A:T.98
- Water bridges: B:G.195, B:G.229
- Salt bridges: B:K.58, B:R.228
- 2 x U: URIDINE-5'-MONOPHOSPHATE(Non-covalent)
U.5: 19 residues within 4Å:- Chain A: S.34, D.36, K.58, H.60, D.89, K.91, M.148, S.149, I.178, P.194, Q.207, Y.209, I.225, G.227, R.228
- Chain B: D.94, I.95, T.98
- Ligands: OMP.4
40 PLIP interactions:20 interactions with chain A, 20 interactions with chain B- Hydrophobic interactions: A:I.178, A:P.194, B:I.178, B:P.194
- Hydrogen bonds: A:S.34, A:D.36, A:K.58, A:D.89, A:T.98, A:S.149, A:S.149, A:S.149, A:Q.207, A:Y.209, A:Y.209, A:Y.209, A:G.227, A:R.228, B:S.34, B:D.36, B:K.58, B:D.89, B:T.98, B:T.98, B:S.149, B:S.149, B:S.149, B:Q.207, B:Y.209, B:Y.209, B:G.227, B:R.228
- Water bridges: A:G.195, A:G.195, A:Q.197, B:G.195, B:G.195, B:Q.197
- Salt bridges: A:R.228, B:R.228
U.10: 19 residues within 4Å:- Chain A: D.94, I.95, T.98
- Chain B: S.34, D.36, K.58, H.60, D.89, K.91, M.148, S.149, I.178, P.194, Q.207, Y.209, I.225, G.227, R.228
- Ligands: OMP.9
Protein-ligand interaction information (PLIP) not available- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rindfleisch, S. et al., Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis. Nat Catal (2022)
- Release Date
- 2022-04-13
- Peptides
- Uridine 5'-monophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x OMP: OROTIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 2 x U: URIDINE-5'-MONOPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rindfleisch, S. et al., Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis. Nat Catal (2022)
- Release Date
- 2022-04-13
- Peptides
- Uridine 5'-monophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B