Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 7oqn.1
Human OMPD-domain of UMPS in complex with substrate OMP at 1.10 Angstroms resolution, 30 minutes soaking
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.10 Å
Oligo State
homo-dimer
Ligands
2 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.1:
2 residues within 4Å:
Chain A:
G.157
,
R.161
4
PLIP interactions
:
4 interactions with chain A
Hydrogen bonds:
A:R.161
,
A:R.161
Water bridges:
A:G.157
,
A:G.157
GOL.5:
2 residues within 4Å:
Chain B:
G.157
,
R.161
4
PLIP interactions
:
4 interactions with chain B
Hydrogen bonds:
B:R.161
,
B:R.161
Water bridges:
B:G.157
,
B:G.157
4 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.2:
2 residues within 4Å:
Chain A:
N.210
,
R.219
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:N.210
Water bridges:
A:Q.208
Salt bridges:
A:R.219
SO4.3:
2 residues within 4Å:
Chain A:
T.151
,
G.206
6
PLIP interactions
:
5 interactions with chain A
,
1 interactions with chain B
Hydrogen bonds:
A:T.151
,
A:T.151
Water bridges:
A:D.203
,
A:G.206
,
A:G.206
,
B:K.129
SO4.6:
2 residues within 4Å:
Chain B:
T.151
,
G.206
4
PLIP interactions
:
4 interactions with chain B
Hydrogen bonds:
B:T.151
,
B:T.151
Water bridges:
B:G.206
,
B:G.206
SO4.7:
2 residues within 4Å:
Chain B:
N.210
,
R.219
3
PLIP interactions
:
3 interactions with chain B
Hydrogen bonds:
B:N.210
Water bridges:
B:Q.208
Salt bridges:
B:R.219
2 x
U
:
URIDINE-5'-MONOPHOSPHATE
(Non-covalent)
U.4:
18 residues within 4Å:
Chain A:
S.34
,
D.36
,
K.58
,
H.60
,
D.89
,
K.91
,
M.148
,
S.149
,
I.178
,
P.194
,
Q.207
,
Y.209
,
V.226
,
G.227
,
R.228
Chain B:
D.94
,
I.95
,
T.98
38
PLIP interactions
:
19 interactions with chain A
,
19 interactions with chain B
Hydrophobic interactions:
A:I.178
,
A:P.194
,
B:I.178
,
B:P.194
Hydrogen bonds:
A:S.34
,
A:D.36
,
A:K.58
,
A:T.98
,
A:S.149
,
A:S.149
,
A:S.149
,
A:Q.207
,
A:Y.209
,
A:Y.209
,
A:Y.209
,
A:G.227
,
A:R.228
,
B:S.34
,
B:D.36
,
B:K.58
,
B:T.98
,
B:T.98
,
B:S.149
,
B:S.149
,
B:S.149
,
B:Q.207
,
B:Y.209
,
B:Y.209
,
B:G.227
,
B:R.228
Water bridges:
A:G.195
,
A:G.195
,
A:Q.197
,
B:G.195
,
B:G.195
,
B:Q.197
Salt bridges:
A:R.228
,
B:R.228
U.8:
18 residues within 4Å:
Chain A:
D.94
,
I.95
,
T.98
Chain B:
S.34
,
D.36
,
K.58
,
H.60
,
D.89
,
K.91
,
M.148
,
S.149
,
I.178
,
P.194
,
Q.207
,
Y.209
,
V.226
,
G.227
,
R.228
Protein-ligand interaction information (PLIP) not available
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Rindfleisch, S. et al., Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis. Nat Catal (2022)
Release Date
2022-04-13
Peptides
Uridine 5'-monophosphate synthase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Uridine 5'-monophosphate synthase
Toggle Identical (AB)
Related Entries With Identical Sequence
7oqf.1
|
7oqi.1
|
7oqk.1
|
7oqm.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme